Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0655 | csp_2 | Lgor_0655 | Lgor_2847 | acyl-CoA synthetase. | Cold shock protein. | 0.472 |
Lgor_0655 | pyrE | Lgor_0655 | Lgor_2848 | acyl-CoA synthetase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.633 |
Lgor_0655 | rplO | Lgor_0655 | Lgor_0250 | acyl-CoA synthetase. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
Lgor_0655 | rpmE | Lgor_0655 | Lgor_0614 | acyl-CoA synthetase. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.603 |
Lgor_0655 | rpoA | Lgor_0655 | Lgor_0245 | acyl-CoA synthetase. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.546 |
Lgor_0655 | rpoB | Lgor_0655 | Lgor_0276 | acyl-CoA synthetase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.580 |
Lgor_0655 | rpoZ | Lgor_0655 | Lgor_1256 | acyl-CoA synthetase. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.494 |
Lgor_0655 | rpsL | Lgor_0655 | Lgor_0274 | acyl-CoA synthetase. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.714 |
Lgor_0655 | rpsN | Lgor_0655 | Lgor_0256 | acyl-CoA synthetase. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.506 |
Lgor_0655 | rpsQ | Lgor_0655 | Lgor_0260 | acyl-CoA synthetase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.987 |
csp_2 | Lgor_0655 | Lgor_2847 | Lgor_0655 | Cold shock protein. | acyl-CoA synthetase. | 0.472 |
csp_2 | pyrE | Lgor_2847 | Lgor_2848 | Cold shock protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.523 |
csp_2 | rplO | Lgor_2847 | Lgor_0250 | Cold shock protein. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.433 |
csp_2 | rpmE | Lgor_2847 | Lgor_0614 | Cold shock protein. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.453 |
csp_2 | rpoA | Lgor_2847 | Lgor_0245 | Cold shock protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.469 |
csp_2 | rpoB | Lgor_2847 | Lgor_0276 | Cold shock protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.499 |
csp_2 | rpoZ | Lgor_2847 | Lgor_1256 | Cold shock protein. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.509 |
csp_2 | rpsL | Lgor_2847 | Lgor_0274 | Cold shock protein. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.487 |
csp_2 | rpsN | Lgor_2847 | Lgor_0256 | Cold shock protein. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.428 |
csp_2 | rpsQ | Lgor_2847 | Lgor_0260 | Cold shock protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.427 |
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