Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_0332 | dac | Lgor_0332 | Lgor_2873 | Conserved exported protein of unknown function. | D-Ala-D-Ala carboxypeptidase. | 0.424 |
Lgor_0332 | mrdA | Lgor_0332 | Lgor_2733 | Conserved exported protein of unknown function. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.615 |
Lgor_0691 | dac | Lgor_0691 | Lgor_2873 | LD-carboxypeptidase. | D-Ala-D-Ala carboxypeptidase. | 0.512 |
Lgor_0691 | mrcA | Lgor_0691 | Lgor_1220 | LD-carboxypeptidase. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.587 |
Lgor_2632 | dac | Lgor_2632 | Lgor_2873 | Muramoyltetrapeptide carboxypeptidase. | D-Ala-D-Ala carboxypeptidase. | 0.498 |
dac | Lgor_0332 | Lgor_2873 | Lgor_0332 | D-Ala-D-Ala carboxypeptidase. | Conserved exported protein of unknown function. | 0.424 |
dac | Lgor_0691 | Lgor_2873 | Lgor_0691 | D-Ala-D-Ala carboxypeptidase. | LD-carboxypeptidase. | 0.512 |
dac | Lgor_2632 | Lgor_2873 | Lgor_2632 | D-Ala-D-Ala carboxypeptidase. | Muramoyltetrapeptide carboxypeptidase. | 0.498 |
dac | ftsI | Lgor_2873 | Lgor_1883 | D-Ala-D-Ala carboxypeptidase. | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.529 |
dac | mrcA | Lgor_2873 | Lgor_1220 | D-Ala-D-Ala carboxypeptidase. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.527 |
dac | mrdA | Lgor_2873 | Lgor_2733 | D-Ala-D-Ala carboxypeptidase. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.521 |
dac | murG | Lgor_2873 | Lgor_1867 | D-Ala-D-Ala carboxypeptidase. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.460 |
dac | pbpC | Lgor_2873 | Lgor_2427 | D-Ala-D-Ala carboxypeptidase. | Penicillin binding protein 1C. | 0.520 |
dac | per1 | Lgor_2873 | Lgor_0751 | D-Ala-D-Ala carboxypeptidase. | Beta-lactamase. | 0.433 |
dac | rodA | Lgor_2873 | Lgor_2734 | D-Ala-D-Ala carboxypeptidase. | Rod shape-determining protein rodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.498 |
ftsI | dac | Lgor_1883 | Lgor_2873 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | D-Ala-D-Ala carboxypeptidase. | 0.529 |
ftsI | mrcA | Lgor_1883 | Lgor_1220 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.902 |
ftsI | mrdA | Lgor_1883 | Lgor_2733 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.801 |
ftsI | murG | Lgor_1883 | Lgor_1867 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.801 |
ftsI | pbpC | Lgor_1883 | Lgor_2427 | Transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | Penicillin binding protein 1C. | 0.695 |
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