STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ybdK-2Glutamate-cysteine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. (406 aa)    
Predicted Functional Partners:
ggt
Gamma-glutamyltranspeptidase.
 
 
 0.893
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
    
 0.869
pepN_1
Aminopeptidase.
     
  0.861
pepA_2
Aminopeptidase; Belongs to the peptidase M17 family.
     
  0.861
pepA
Leucine aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
  0.861
gshA
Glutamate--cysteine ligase.
     
  0.861
glnA
Glutamine synthetase.
  
  
  0.852
glsA
Glutaminase; Belongs to the glutaminase family.
   
 
  0.837
puuA
Glutamine synthase; Belongs to the glutamine synthetase family.
     
  0.833
metB
Cystathionine beta-lyase.
     
  0.833
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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