Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgor_2585 | Lgor_2586 | Lgor_2585 | Lgor_2586 | Putative conjugative transfer protein TrbB. | Putative conjugative transfer protein TraF. | 0.950 |
Lgor_2585 | ahpC_2 | Lgor_2585 | Lgor_2927 | Putative conjugative transfer protein TrbB. | Alkyl hydroperoxide reductase. | 0.713 |
Lgor_2585 | btuE | Lgor_2585 | Lgor_0714 | Putative conjugative transfer protein TrbB. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.505 |
Lgor_2585 | trxB | Lgor_2585 | Lgor_1490 | Putative conjugative transfer protein TrbB. | Thioredoxin reductase. | 0.591 |
Lgor_2586 | Lgor_2585 | Lgor_2586 | Lgor_2585 | Putative conjugative transfer protein TraF. | Putative conjugative transfer protein TrbB. | 0.950 |
Lgor_2586 | ahpC_2 | Lgor_2586 | Lgor_2927 | Putative conjugative transfer protein TraF. | Alkyl hydroperoxide reductase. | 0.719 |
Lgor_2586 | btuE | Lgor_2586 | Lgor_0714 | Putative conjugative transfer protein TraF. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.505 |
Lgor_2586 | trxB | Lgor_2586 | Lgor_1490 | Putative conjugative transfer protein TraF. | Thioredoxin reductase. | 0.609 |
ahpC_2 | Lgor_2585 | Lgor_2927 | Lgor_2585 | Alkyl hydroperoxide reductase. | Putative conjugative transfer protein TrbB. | 0.713 |
ahpC_2 | Lgor_2586 | Lgor_2927 | Lgor_2586 | Alkyl hydroperoxide reductase. | Putative conjugative transfer protein TraF. | 0.719 |
ahpC_2 | btuE | Lgor_2927 | Lgor_0714 | Alkyl hydroperoxide reductase. | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | 0.623 |
ahpC_2 | ccmG | Lgor_2927 | Lgor_1817 | Alkyl hydroperoxide reductase. | Cytochrome C biogenesis protein. | 0.719 |
ahpC_2 | dipZ | Lgor_2927 | Lgor_0595 | Alkyl hydroperoxide reductase. | Cytochrome C biogenesis protein. | 0.770 |
ahpC_2 | fur | Lgor_2927 | Lgor_0224 | Alkyl hydroperoxide reductase. | Ferric uptake regulation protein; Belongs to the Fur family. | 0.670 |
ahpC_2 | grlA | Lgor_2927 | Lgor_2928 | Alkyl hydroperoxide reductase. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.728 |
ahpC_2 | resA | Lgor_2927 | Lgor_2950 | Alkyl hydroperoxide reductase. | Thiol-disulfide oxidoreductase. | 0.719 |
ahpC_2 | sodB | Lgor_2927 | Lgor_2929 | Alkyl hydroperoxide reductase. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.719 |
ahpC_2 | trxB | Lgor_2927 | Lgor_1490 | Alkyl hydroperoxide reductase. | Thioredoxin reductase. | 0.948 |
btuE | Lgor_2585 | Lgor_0714 | Lgor_2585 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Putative conjugative transfer protein TrbB. | 0.505 |
btuE | Lgor_2586 | Lgor_0714 | Lgor_2586 | Glutathione peroxidase; Belongs to the glutathione peroxidase family. | Putative conjugative transfer protein TraF. | 0.505 |
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