STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aatAAspartate aminotransferase A. (522 aa)    
Predicted Functional Partners:
lysAC_1
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC).
 
 0.913
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 0.913
pheA_3
2-methylcitrate synthase.
 
  
  0.810
argF
Ornithine carbamoyltransferase.
 
  
 0.802
trpE
Anthranilate synthase.
   
 0.774
Lgor_1489
DNA-binding transcriptional dual regulator Crp.
  
  
  0.749
Lgor_0650
2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase.
  
  
 0.739
Lgor_2064
Ankyrin repeat-containing protein.
  
 0.727
Lgor_0942
cNMP-binding protein.
  
 
 0.726
fadH
2,4-dienoyl-CoA reductase.
  
 
 0.721
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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