STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (632 aa)    
Predicted Functional Partners:
aguA
Peptidylarginine deiminase.
 
  
 0.959
Lgor_2955
Carbon-nitrogen hydrolase.
 
   
 0.810
hutG
Formimidoylglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family.
  
 
 0.794
argH
Argininosuccinate lyase.
     
 0.640
cadA
Lysine decarboxylase, inducible.
     
 0.640
Lgor_3219
NG,NG-dimethylarginine dimethylaminohydrolase.
     
 0.636
Lgor_0537
Spermidine synthase.
    
 0.628
Lgor_3276
Spermidine synthase.
    
 0.628
Lgor_2954
Hypothetical protein.
       0.566
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
    
  0.522
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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