STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctrDCapsule polysaccharide export ATP-binding protein ctrD (Capsular-polysaccharide-transporting ATPase). (344 aa)    
Predicted Functional Partners:
ctrC
Capsule polysaccharide export inner-membrane protein ctrC.
 0.999
Lgor_0966
ABC-2 type transporter.
 
 0.984
ctrB
Capsule polysaccharide export inner-membrane protein ctrB.
 
 
 0.968
bexD
Capsule polysaccharide export protein bexD precursor.
 
 
 0.905
Lgor_3103
Glycosyltransferase.
  
 
 0.806
Lgor_3104
Capsule polysaccharide biosynthesis protein.
 
   
 0.766
kpsD
Polysialic acid transport protein KpsD precursor.
  
 
 0.758
comF
Competence protein ComF.
   
    0.597
mshA
Glycosyltransferase.
 
 
 0.579
smc_2
Chromosome partition protein Smc.
  
 
 0.569
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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