STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctrCCapsule polysaccharide export inner-membrane protein ctrC. (261 aa)    
Predicted Functional Partners:
ctrD
Capsule polysaccharide export ATP-binding protein ctrD (Capsular-polysaccharide-transporting ATPase).
 0.999
wzt
ABC transporter of LPS O-antigen.
 0.984
ctrB
Capsule polysaccharide export inner-membrane protein ctrB.
 
 
 0.980
bexD
Capsule polysaccharide export protein bexD precursor.
 
 
 0.949
Lgor_3103
Glycosyltransferase.
 
  
 0.801
kpsD
Polysialic acid transport protein KpsD precursor.
  
 
 0.796
Lgor_3104
Capsule polysaccharide biosynthesis protein.
 
   
 0.780
Lgor_0966
ABC-2 type transporter.
     
  0.740
smc_2
Chromosome partition protein Smc.
  
    0.593
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.509
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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