STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctrCCapsule polysaccharide export inner-membrane protein ctrC. (261 aa)    
Predicted Functional Partners:
ctrD
Capsule polysaccharide export ATP-binding protein ctrD (Capsular-polysaccharide-transporting ATPase).
 0.999
wzt
ABC transporter of LPS O-antigen.
 0.986
ctrB
Capsule polysaccharide export inner-membrane protein ctrB.
 
 
 0.974
bexD
Capsule polysaccharide export protein bexD precursor.
 
 
 0.942
ybhF_3
ABC transporter ElsE.
    
 0.809
Lgor_3103
Glycosyltransferase.
  
  
 0.789
Lgor_3104
Capsule polysaccharide biosynthesis protein.
 
   
 0.787
kpsD
Polysialic acid transport protein KpsD precursor.
  
 
 0.767
ugpE
Sn-glycerol-3-phosphate transport system permease protein UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
     
  0.682
smc_2
Chromosome partition protein Smc.
  
  
 0.555
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.