STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smc_2Chromosome partition protein Smc. (626 aa)    
Predicted Functional Partners:
cpsB
Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.765
mshA
Glycosyltransferase.
 
     0.691
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
 0.646
rffG
NAD dependent epimerase/dehydratase family protein.
 
 
 0.619
tuaA
Putative undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase.
  
 
 0.587
Lgor_3110
Hypothetical protein.
       0.580
ctrD
Capsule polysaccharide export ATP-binding protein ctrD (Capsular-polysaccharide-transporting ATPase).
  
 
 0.569
ctrC
Capsule polysaccharide export inner-membrane protein ctrC.
  
  
 0.555
epsL
Putative sugar transferase EpsL.
  
 
 0.552
rmlA1
Nucleotidyltransferase.
 
 0.551
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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