STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgor_3117IcmF. (973 aa)    
Predicted Functional Partners:
Lgor_3116
IcmH (DotU).
 
 
 0.994
Lgor_0550
Hypothetical protein.
 
 
 0.935
Lgor_0544
Hypothetical protein.
 
 
 0.914
Lgor_0551
Hypothetical protein.
 
 
 0.903
Lgor_0546
Hypothetical protein.
 
 
 0.894
Lgor_0547
Hypothetical protein.
 
  
 0.849
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.847
Lgor_0552
Phage-related baseplate assembly protein.
 
  
 0.837
Lgor_0543
Hypothetical protein.
 
 
 0.831
Lgor_0541
Hypothetical protein; ImpA-related N-terminal.
 
 
 0.823
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.