Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pilFTwitching motility protein PilF. (239 aa)    
Predicted Functional Partners:
rodZ
DNA-binding protein.
  
    0.831
hisS
histidyl-tRNA synthetase.
  
    0.828
Lgor_3185
Transmembrane protein.
 
     0.818
pilP
Tfp pilus assembly protein PilP.
  
   
 0.764
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.746
pilN
Tfp pilus assembly protein PilN.
  
   
 0.719
pilO
Tfp pilus assembly protein PilO.
  
   
 0.716
Lgor_2745
Hypothetical protein.
  
     0.701
fliH
Polar flagellar assembly protein FliH.
 
   
 0.698
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
   
 0.676
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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