STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilFTwitching motility protein PilF. (239 aa)    
Predicted Functional Partners:
rodZ
DNA-binding protein.
  
    0.807
Lgor_3185
Transmembrane protein.
 
     0.798
hisS
histidyl-tRNA synthetase.
       0.791
pilP
Tfp pilus assembly protein PilP.
  
   
 0.770
pilO
Tfp pilus assembly protein PilO.
  
   
 0.745
pilN
Tfp pilus assembly protein PilN.
  
   
 0.733
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.709
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
   
 0.708
letS_1
Legionella transmission sensor LetS.
    
 0.707
Lgor_2745
Hypothetical protein.
  
     0.701
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.