STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleD-2Sensor histidine kinase. (973 aa)    
Predicted Functional Partners:
gmr_2
Regulatory protein (GGDEF domain).
 
0.983
cph2_5
Regulatory protein (GGDEF and EAL domains).
 
0.969
arcB_1
Sensory box histidine kinase/response regulator.
 0.964
arcB_4
Sensory histidine-kinase / response regulator.
 
 0.961
letS_2
Legionella transmission sensor LetS.
 
 
 0.947
cheA
Chemotaxis histidine kinase.
 
 
 0.941
ycgG_1
Regulatory protein (EAL domain).
 
 
 0.940
ycgG_2
Signal transduction protein (EAL/GGDEF domain protein).
 
 
 0.936
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.927
cph2_2
Regulatory protein (GGDEF and EAL domains).
 
0.923
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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