Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgor_3243Signal peptide protein. (88 aa)    
Predicted Functional Partners:
Lgor_2005
Hypothetical protein.
 
  
 0.914
Lgor_1291
Hypothetical protein.
 
  
 0.907
Lgor_1292
Hypothetical protein.
 
  
 0.901
Lgor_2006
Hypothetical protein; Belongs to the UPF0276 family.
 
  
 0.897
Lgor_1608
Hypothetical protein.
 
  
 0.878
yceJ
Cytochrome b561.
 
     0.800
yceI
Polyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family.
       0.773
yceI_2
Putative YceI-like family protein; Belongs to the UPF0312 family.
       0.771
Lgor_2007
Silver efflux pump.
 
     0.575
bioD
Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
       0.533
Your Current Organism:
Fluoribacter gormanii
NCBI taxonomy Id: 464
Other names: ATCC 33297, ATCC 33342, CCUG 12267, CIP 104724, DSM 16641, DSM 25296, F. gormanii, Legionella gormanii, NCTC 11401, strain LS-13
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