STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF55729.1TniQ protein. (344 aa)    
Predicted Functional Partners:
SMF55722.1
TniB protein.
 
   
 0.956
SMF55717.1
Putative transposase.
 
     0.950
SMF53524.1
Putative transposase.
 
     0.792
SMF24757.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.697
SMF55759.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.696
SMF55742.1
Protein of unknown function.
  
     0.695
SMF20423.1
Protein of unknown function.
  
     0.686
SMF24752.1
Protein of unknown function.
  
     0.677
SMF56542.1
Uncharacterized conserved protein, DUF736 family.
  
     0.495
SMF25769.1
Uncharacterized conserved protein, DUF736 family.
  
     0.486
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.