STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF58409.12,4'-dihydroxyacetophenone dioxygenase. (177 aa)    
Predicted Functional Partners:
SMF58413.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.785
SMF58434.1
Branched-chain amino acid transport system substrate-binding protein.
 
     0.744
SMF58548.1
AraC family transcriptional regulator, transcriptional activator of pobA.
 
   0.694
SMF58425.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.681
SMF07941.1
Helix-turn-helix.
  
 0.599
SMF10527.1
Transcriptional regulator, contains XRE-family HTH domain.
  
 0.599
SMF66539.1
Acetyltransferase (GNAT) family protein.
    
  0.545
SMF58430.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.544
SMF58422.1
Branched-chain amino acid transport system ATP-binding protein.
 
     0.542
SMF43320.1
Chemotaxis protein MotA.
    
   0.513
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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