node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMF38484.1 | rplC | SAMN02982989_1636 | SAMN02982989_3038 | Cold shock protein (beta-ribbon, CspA family). | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.693 |
SMF38484.1 | rplP | SAMN02982989_1636 | SAMN02982989_3045 | Cold shock protein (beta-ribbon, CspA family). | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.697 |
SMF38484.1 | rplS | SAMN02982989_1636 | SAMN02982989_0418 | Cold shock protein (beta-ribbon, CspA family). | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.689 |
SMF38484.1 | rplT | SAMN02982989_1636 | SAMN02982989_1752 | Cold shock protein (beta-ribbon, CspA family). | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.692 |
SMF38484.1 | rpmA | SAMN02982989_1636 | SAMN02982989_1216 | Cold shock protein (beta-ribbon, CspA family). | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.690 |
SMF38484.1 | rpoA | SAMN02982989_1636 | SAMN02982989_3062 | Cold shock protein (beta-ribbon, CspA family). | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.790 |
SMF38484.1 | rpoB | SAMN02982989_1636 | SAMN02982989_3030 | Cold shock protein (beta-ribbon, CspA family). | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.810 |
SMF38484.1 | rpsE | SAMN02982989_1636 | SAMN02982989_3055 | Cold shock protein (beta-ribbon, CspA family). | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.683 |
SMF38484.1 | rpsL | SAMN02982989_1636 | SAMN02982989_3033 | Cold shock protein (beta-ribbon, CspA family). | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.740 |
SMF38484.1 | rpsQ | SAMN02982989_1636 | SAMN02982989_3047 | Cold shock protein (beta-ribbon, CspA family). | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.706 |
rplC | SMF38484.1 | SAMN02982989_3038 | SAMN02982989_1636 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Cold shock protein (beta-ribbon, CspA family). | 0.693 |
rplC | rplP | SAMN02982989_3038 | SAMN02982989_3045 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplS | SAMN02982989_3038 | SAMN02982989_0418 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.997 |
rplC | rplT | SAMN02982989_3038 | SAMN02982989_1752 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
rplC | rpmA | SAMN02982989_3038 | SAMN02982989_1216 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
rplC | rpoA | SAMN02982989_3038 | SAMN02982989_3062 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
rplC | rpoB | SAMN02982989_3038 | SAMN02982989_3030 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
rplC | rpsE | SAMN02982989_3038 | SAMN02982989_3055 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
rplC | rpsL | SAMN02982989_3038 | SAMN02982989_3033 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
rplC | rpsQ | SAMN02982989_3038 | SAMN02982989_3047 | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |