STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF39843.1AraC family transcriptional regulator. (252 aa)    
Predicted Functional Partners:
SMF17622.1
AraC-binding-like domain-containing protein.
  
     0.709
SMF05654.1
Glutamate synthase (NADH) large subunit.
    
  0.694
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.656
SME98190.1
AraC-type DNA-binding protein.
  
     0.590
SMF39834.1
Hypothetical protein.
       0.535
SMF03397.1
AraC-type DNA-binding protein.
  
     0.535
SMF19329.1
AraC family transcriptional regulator, transcriptional activator of pobA.
  
     0.527
SMF19632.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
 
   0.521
SMF74505.1
Anthranilate synthase, component I /anthranilate synthase, component II.
     
 0.517
SMF39851.1
methylated-DNA-[protein]-cysteine S-methyltransferase.
       0.516
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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