STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF50829.1Murein L,D-transpeptidase YcbB/YkuD. (447 aa)    
Predicted Functional Partners:
SMF05317.1
Uncharacterized conserved protein YcbK, DUF882 family.
 
     0.748
SME96455.1
Murein L,D-transpeptidase YafK.
  
   
 0.520
SMF50816.1
DNA-binding transcriptional regulator, MarR family.
 
   
 0.500
SMF50834.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase.
       0.493
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.452
SMF50823.1
Energy-coupling factor transport system ATP-binding protein.
       0.426
SMF50825.1
Energy-coupling factor transport system permease protein.
       0.426
SMF50827.1
Adenine phosphoribosyltransferase.
       0.426
SMF50821.1
Hypothetical protein.
       0.407
SMF50812.1
Hypothetical protein.
 
   
 0.401
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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