STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF72224.1Tripartite ATP-independent transporter solute receptor, DctP family. (337 aa)    
Predicted Functional Partners:
SMF72225.1
TRAP transporter, DctM subunit.
    0.908
SMF72227.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.908
SMF11019.1
TRAP transporter, DctM subunit.
  
 0.876
SME98856.1
TRAP transporter, DctM subunit.
  
 0.875
SMF59817.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.824
SMF20621.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.805
SMF59811.1
TRAP transporter, DctM subunit.
    0.792
SMF72253.1
TRAP transporter, DctM subunit.
 
    0.792
SMF17240.1
TRAP transporter, DctM subunit.
    0.790
SMF20629.1
TRAP transporter, DctM subunit.
    0.790
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.