STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF72263.1Galactonate dehydratase. (397 aa)    
Predicted Functional Partners:
SMF72266.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
    
  0.800
SMF72271.1
Multiple sugar transport system permease protein.
       0.768
SMF72273.1
Multiple sugar transport system permease protein.
       0.768
SMF72285.1
Transcriptional regulator, IclR family.
 
  
  0.622
SMF72292.1
2-dehydro-3-deoxygalactonokinase.
 
 
 0.601
SMF72288.1
2-dehydro-3-deoxygalactonokinase.
 
 
 0.589
SMF72293.1
2-dehydro-3-deoxyphosphogalactonate aldolase.
 
   
 0.584
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.561
SMF21288.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 
0.474
SMF20605.1
Galactonate dehydratase.
  
  
 
0.466
Your Current Organism:
Rhizobium oryzae
NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505
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