STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO47371.1Uncharacterized conserved protein. (126 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
  
 0.880
dcp_1
Peptidyl-dipeptidase dcp.
       0.701
rhaB
Rhamnulokinase.
  
  
 0.695
xylB
Xylulose kinase.
  
  
 0.684
fucP_2
L-fucose permease.
 
  
 0.650
fucP_3
L-fucose permease.
 
  
 0.633
CUO57870.1
Sulfotransferase domain.
  
     0.596
fucP_1
L-fucose permease.
 
  
 0.559
CUO69764.1
SusD family.
  
     0.558
CUP28165.1
Putative glycoside hydrolase.
  
     0.538
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.