STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO50558.1Helix-turn-helix domain. (95 aa)    
Predicted Functional Partners:
porA_1
Pyruvate synthase subunit porA.
     
 0.815
gltB
Ferredoxin-dependent glutamate synthase 1.
    
  0.810
CUO50589.1
Helix-turn-helix domain.
       0.778
CUP54427.1
Helix-turn-helix domain.
 
     0.771
CUP57667.1
CO dehydrogenase maturation factor.
  
     0.743
CUP58217.1
Uncharacterised protein.
  
     0.724
traM
Bacteroides conjugative transposon TraM protein.
  
     0.669
CUP58423.1
Bacteroides conjugative transposon TraN protein.
  
     0.655
CUO44766.1
CO dehydrogenase maturation factor.
  
     0.638
traJ
Bacteroides conjugative transposon TraJ protein.
  
     0.622
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.