STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaTL-rhamnose-H(+) transport protein. (341 aa)    
Predicted Functional Partners:
rhaA
L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
  
 0.810
CUO84097.1
Glycosyl hydrolases family 2%2C sugar binding domain.
 
     0.771
rhaS_1
L-rhamnose operon regulatory protein rhaS.
 
     0.741
rhaB
Rhamnulokinase.
  
  
 0.688
CUP51501.1
Uncharacterised protein.
 
     0.679
rhaD
Rhamnulose-1-phosphate aldolase.
 
  
 0.676
CUO58342.1
Bacterial alpha-L-rhamnosidase.
 
     0.650
CUO58417.1
Bacterial alpha-L-rhamnosidase.
 
     0.598
CUP76485.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.593
CUP40661.1
Bacterial alpha-L-rhamnosidase.
 
     0.542
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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