STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bepC_1Outer membrane efflux protein BepC precursor. (421 aa)    
Predicted Functional Partners:
mexA_2
Multidrug resistance protein mexA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.949
mexB
Multidrug-efflux transporter MexB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.913
ttgA_2
Probable efflux pump periplasmic linker ttgA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.759
bepF_2
Efflux pump periplasmic linker BepF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.643
acrB
Acriflavine resistance protein B; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  0.639
czcB
Cation efflux system protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.634
CUO37508.1
Putative efflux pump membrane fusion protein.
  
 0.631
CUO38493.1
Putative efflux pump membrane fusion protein.
  
 0.631
bepD
Efflux pump periplasmic linker BepD precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.620
ttgA_1
Probable efflux pump periplasmic linker ttgA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.602
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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