STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO66643.1Uncharacterised protein. (234 aa)    
Predicted Functional Partners:
CUO66607.1
Uncharacterised protein.
       0.791
CUO66680.1
Uncharacterised protein.
       0.766
CUO66712.1
Conjugal transfer ATP-binding protein TraC.
       0.754
CUO66745.1
Uncharacterised protein.
       0.738
CUO66781.1
Type IV secretory pathway%2C VirB4 components.
       0.710
CUO66563.1
Bacteroides conjugative transposon TraJ protein.
       0.697
CUO66528.1
Bacteroides conjugative transposon TraK protein.
       0.658
CUO66457.1
Bacteroides conjugative transposon TraM protein.
       0.647
CUO66493.1
Uncharacterised protein.
       0.647
CUO66411.1
Bacteroides conjugative transposon TraN protein.
       0.539
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.