STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO66712.1Conjugal transfer ATP-binding protein TraC. (944 aa)    
Predicted Functional Partners:
CUO66781.1
Type IV secretory pathway%2C VirB4 components.
 
     0.937
CUO66528.1
Bacteroides conjugative transposon TraK protein.
 
  
 0.934
CUO66563.1
Bacteroides conjugative transposon TraJ protein.
 
   
 0.920
CUO66457.1
Bacteroides conjugative transposon TraM protein.
 
     0.907
CUO66411.1
Bacteroides conjugative transposon TraN protein.
 
   
 0.882
CUO66904.1
Plasmid-partitioning protein SopA.
 
     0.877
CUO66342.1
Type IV secretory pathway%2C VirD4 components.
 
  
 0.876
traK
Bacteroides conjugative transposon TraK protein.
 
  
 0.828
CUO45026.1
Type IV secretory pathway%2C TrbF components.
 
  
 0.824
CUO66680.1
Uncharacterised protein.
       0.780
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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