STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO67670.1Uncharacterised protein. (167 aa)    
Predicted Functional Partners:
CUO67841.1
DNA-binding transcriptional regulator AraC.
  
     0.774
gltB
Ferredoxin-dependent glutamate synthase 1.
    
  0.713
btr_2
Bacillibactin transport regulator.
 
    
0.629
CUO67919.1
Antibiotic biosynthesis monooxygenase.
  
     0.589
CUO67701.1
Uncharacterized conserved protein.
       0.510
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.497
CUP29471.1
SusD family.
  
     0.460
fepA_6
Enterobactin outer-membrane receptor.
  
     0.454
fepA_5
Enterobactin outer-membrane receptor.
  
     0.423
CUP22151.1
SusD family.
  
     0.421
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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