Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUO78345.1 | mltD_1 | ERS852463_01039 | ERS852463_01038 | Uncharacterised protein. | Membrane-bound lytic murein transglycosylase D precursor. | 0.802 |
CUO78345.1 | parB | ERS852463_01039 | ERS852463_01040 | Uncharacterised protein. | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | 0.791 |
CUO78345.1 | soj_1 | ERS852463_01039 | ERS852463_01041 | Uncharacterised protein. | Sporulation initiation inhibitor protein soj. | 0.578 |
CUO78345.1 | spoT | ERS852463_01039 | ERS852463_01037 | Uncharacterised protein. | Guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.580 |
CUO78430.1 | soj_1 | ERS852463_01042 | ERS852463_01041 | Putative toxin-antitoxin system toxin component%2C PIN family. | Sporulation initiation inhibitor protein soj. | 0.450 |
dnaA | parB | ERS852463_01749 | ERS852463_01040 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | 0.687 |
dnaA | soj_1 | ERS852463_01749 | ERS852463_01041 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Sporulation initiation inhibitor protein soj. | 0.515 |
mltD_1 | CUO78345.1 | ERS852463_01038 | ERS852463_01039 | Membrane-bound lytic murein transglycosylase D precursor. | Uncharacterised protein. | 0.802 |
mltD_1 | parB | ERS852463_01038 | ERS852463_01040 | Membrane-bound lytic murein transglycosylase D precursor. | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | 0.799 |
mltD_1 | soj_1 | ERS852463_01038 | ERS852463_01041 | Membrane-bound lytic murein transglycosylase D precursor. | Sporulation initiation inhibitor protein soj. | 0.578 |
mltD_1 | spoT | ERS852463_01038 | ERS852463_01037 | Membrane-bound lytic murein transglycosylase D precursor. | Guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.633 |
parB | CUO78345.1 | ERS852463_01040 | ERS852463_01039 | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | Uncharacterised protein. | 0.791 |
parB | dnaA | ERS852463_01040 | ERS852463_01749 | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.687 |
parB | mltD_1 | ERS852463_01040 | ERS852463_01038 | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | Membrane-bound lytic murein transglycosylase D precursor. | 0.799 |
parB | soj_1 | ERS852463_01040 | ERS852463_01041 | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | Sporulation initiation inhibitor protein soj. | 0.994 |
parB | spoT | ERS852463_01040 | ERS852463_01037 | Probable chromosome-partitioning protein parB; Belongs to the ParB family. | Guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.525 |
soj_1 | CUO78345.1 | ERS852463_01041 | ERS852463_01039 | Sporulation initiation inhibitor protein soj. | Uncharacterised protein. | 0.578 |
soj_1 | CUO78430.1 | ERS852463_01041 | ERS852463_01042 | Sporulation initiation inhibitor protein soj. | Putative toxin-antitoxin system toxin component%2C PIN family. | 0.450 |
soj_1 | dnaA | ERS852463_01041 | ERS852463_01749 | Sporulation initiation inhibitor protein soj. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.515 |
soj_1 | mltD_1 | ERS852463_01041 | ERS852463_01038 | Sporulation initiation inhibitor protein soj. | Membrane-bound lytic murein transglycosylase D precursor. | 0.578 |
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