STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO88075.1RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)    
Predicted Functional Partners:
CUO88037.1
Fec operon regulator FecR.
 
   0.840
cpdA
3'%2C5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
       0.773
CUO87754.1
Fec operon regulator FecR.
  
   0.638
CUO88661.1
Fec operon regulator FecR.
  
   0.621
CUP35891.1
Fec operon regulator FecR.
  
   0.620
CUP82302.1
Fec operon regulator FecR.
  
   0.614
CUP43011.1
Fec operon regulator FecR.
  
   0.611
CUP28694.1
Fec operon regulator FecR.
  
   0.605
CUO77342.1
Fec operon regulator FecR.
 
   0.597
CUO98194.1
Fec operon regulator FecR.
  
   0.596
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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