STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO88527.1Uncharacterised protein. (523 aa)    
Predicted Functional Partners:
CUO88496.1
Uncharacterized Fe-S protein.
       0.776
exsH
Endo-1%2C3-1%2C4-beta-glycanase ExsH.
       0.773
yicI_1
Alpha-xylosidase; Belongs to the glycosyl hydrolase 31 family.
       0.719
CUO88592.1
SusD family.
 
     0.696
CUO88626.1
Outer membrane receptor for ferrienterochelin and colicins.
 
     0.547
cirA_5
Colicin I receptor precursor.
  
     0.482
dnaG_2
DNA primase.
  
     0.470
CUO88424.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.457
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.