STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaBAltronate oxidoreductase. (479 aa)    
Predicted Functional Partners:
garD
D-galactarate dehydratase.
 
 0.991
uxaC
Uronate isomerase.
 
 
 0.931
rfbM_3
Mannose-1-phosphate guanylyltransferase rfbM.
    
 0.851
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 0.796
CUO89291.1
Uncharacterised protein.
       0.623
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.609
xylA_2
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.603
adh
NADP-dependent alcohol dehydrogenase.
    
 0.557
CUO89246.1
Lactonase drp35.
     
 0.538
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.536
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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