STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iphPTyrosine-protein phosphatase precursor. (354 aa)    
Predicted Functional Partners:
ychM
Putative sulfate transporter ychM.
   
   0.925
rfaQ
Lipopolysaccharide core heptosyltransferase rfaQ.
  
   0.843
guaA_1
GMP synthase [glutamine-hydrolyzing].
 
  
  0.841
guaB
Inosine-5'-monophosphate dehydrogenase.
    
  0.809
guaA_2
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.808
CUO36182.1
Putative peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.714
CUO36232.1
Putative peptidyl-prolyl cis-trans isomerase.
    
   0.714
CUO41195.1
Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase.
    
   0.714
yccM_1
Putative electron transport protein yccM.
    
   0.708
porA_1
Pyruvate synthase subunit porA.
    
   0.708
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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