STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP06799.12-oxoacid:acceptor oxidoreductase%2C delta subunit%2C pyruvate/2-ketoisovalerate family. (62 aa)    
Predicted Functional Partners:
porA_1
Pyruvate synthase subunit porA.
    
 0.915
CUP47807.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.846
maeB
NADP-dependent malic enzyme.
    
 0.825
cfiA_1
2-oxoglutarate carboxylase large subunit.
     
 0.805
cfiA_2
2-oxoglutarate carboxylase large subunit.
     
 0.805
rocA
1-pyrroline-5-carboxylate dehydrogenase.
  
 
  0.665
acs
Acetyl-coenzyme A synthetase.
    
 0.664
cdr
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
    
 0.503
gltA
Citrate synthase; Belongs to the citrate synthase family.
     
 0.486
yccM_1
Putative electron transport protein yccM.
    
 0.481
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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