STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepE_1Aminopeptidase E; Belongs to the peptidase C1 family. (405 aa)    
Predicted Functional Partners:
nudC_1
NADH pyrophosphatase.
    
   0.547
nudC_2
NADH pyrophosphatase.
    
   0.547
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.531
ptpA_1
Prolyl tripeptidyl peptidase precursor.
  
     0.499
pepDA_1
Dipeptidase A.
 
     0.463
CUO58932.1
Predicted O-linked N-acetylglucosamine transferase%2C SPINDLY family.
  
     0.451
CUO60853.1
Arabinose efflux permease.
  
     0.448
CUP33593.1
Endonuclease/Exonuclease/phosphatase family.
  
     0.432
CUO92874.1
PQQ-dependent catabolism-associated beta-propeller protein.
  
     0.417
CUO58970.1
Uncharacterised protein.
  
     0.415
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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