STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP07143.1Bacterial alpha-L-rhamnosidase. (762 aa)    
Predicted Functional Partners:
CUO84097.1
Glycosyl hydrolases family 2%2C sugar binding domain.
  
     0.749
CUP44003.1
Bacterial alpha-L-rhamnosidase.
  
     0.736
CUO87099.1
Arylsulfatase.
 
   
  0.710
CUP51501.1
Uncharacterised protein.
  
     0.644
betC_1
Choline-sulfatase.
 
      0.634
CUP76485.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
     0.625
yesR
Unsaturated rhamnogalacturonyl hydrolase YesR.
 
  
  0.613
CUO75492.1
Sulfatase.
  
     0.607
CUP07183.1
FKBP-type peptidyl-prolyl cis-trans isomerase.
   
   0.593
CUP01356.1
Heparinase II/III-like protein.
  
     0.591
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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