Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUO52510.1 | nusA | ERS852463_00434 | ERS852463_01514 | RNA polymerase Rpb6. | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | 0.967 |
CUO52510.1 | nusB | ERS852463_00434 | ERS852463_01885 | RNA polymerase Rpb6. | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.896 |
CUO52510.1 | rpoA | ERS852463_00434 | ERS852463_03006 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
CUO52510.1 | rpoB | ERS852463_00434 | ERS852463_01734 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
CUO52510.1 | rpoC | ERS852463_00434 | ERS852463_01735 | RNA polymerase Rpb6. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
CUO52510.1 | rpsD | ERS852463_00434 | ERS852463_03007 | RNA polymerase Rpb6. | BS5; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.935 |
CUO52510.1 | rpsJ | ERS852463_00434 | ERS852463_03034 | RNA polymerase Rpb6. | BS13; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.789 |
CUO52510.1 | suhB | ERS852463_00434 | ERS852463_01409 | RNA polymerase Rpb6. | Inositol-1-monophosphatase. | 0.808 |
fmt | nusB | ERS852463_00446 | ERS852463_01885 | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.813 |
nusA | CUO52510.1 | ERS852463_01514 | ERS852463_00434 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | RNA polymerase Rpb6. | 0.967 |
nusA | nusB | ERS852463_01514 | ERS852463_01885 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.903 |
nusA | rpoA | ERS852463_01514 | ERS852463_03006 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
nusA | rpoB | ERS852463_01514 | ERS852463_01734 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
nusA | rpoC | ERS852463_01514 | ERS852463_01735 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
nusA | rpsD | ERS852463_01514 | ERS852463_03007 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | BS5; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.966 |
nusA | rpsJ | ERS852463_01514 | ERS852463_03034 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | BS13; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.969 |
nusA | suhB | ERS852463_01514 | ERS852463_01409 | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | Inositol-1-monophosphatase. | 0.817 |
nusB | CUO52510.1 | ERS852463_01885 | ERS852463_00434 | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | RNA polymerase Rpb6. | 0.896 |
nusB | fmt | ERS852463_01885 | ERS852463_00446 | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.813 |
nusB | nusA | ERS852463_01885 | ERS852463_01514 | N utilization substance protein B homolog; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Transcription elongation protein nusA; Participates in both transcription termination and antitermination. | 0.903 |
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