Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CUP19185.1SusD family. (593 aa)    
Predicted Functional Partners:
CUP19154.1
Outer membrane cobalamin receptor protein.
 
     0.941
CUO52104.1
Outer membrane cobalamin receptor protein.
  
 
   0.811
CUO88317.1
Outer membrane cobalamin receptor protein.
  
 
   0.811
CUO85488.1
Outer membrane cobalamin receptor protein.
  
 
   0.808
CUO99208.1
Outer membrane cobalamin receptor protein.
  
 
   0.808
fepA_1
Enterobactin outer-membrane receptor.
  
 
   0.804
CUP35927.1
TonB-linked outer membrane protein%2C SusC/RagA family.
  
 
   0.792
fepA_6
Enterobactin outer-membrane receptor.
  
 
   0.790
CUO88626.1
Outer membrane receptor for ferrienterochelin and colicins.
  
 
   0.783
CUP43058.1
Outer membrane cobalamin receptor protein.
  
 
   0.781
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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