STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_7Tyrosine recombinase XerD; Belongs to the 'phage' integrase family. (389 aa)    
Predicted Functional Partners:
xerC_2
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.741
CUP12904.1
Uncharacterised protein.
  
     0.701
CUP79023.1
Site-specific recombinase XerD.
  
     0.657
porA_1
Pyruvate synthase subunit porA.
    
  0.654
CUP20474.1
SusD family.
       0.437
rarA
Replication-associated recombination protein A.
       0.424
CUO83422.1
DNA binding domain%2C excisionase family.
  
     0.414
CUP20509.1
Outer membrane cobalamin receptor protein.
       0.409
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.