STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uidABeta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (617 aa)    
Predicted Functional Partners:
lacL_1
Beta-galactosidase large subunit; Belongs to the glycosyl hydrolase 2 family.
 
    
0.825
abnA_2
Arabinan endo-1%2C5-alpha-L-arabinosidase precursor.
     0.780
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.641
abnA_1
Arabinan endo-1%2C5-alpha-L-arabinosidase precursor; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.623
CUO59268.1
Uncharacterized protein%2C YhcH/YjgK/YiaL family.
   
  0.501
abnA_3
Arabinan endo-1%2C5-alpha-L-arabinosidase precursor; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.483
CUP36106.1
Predicted bile acid beta-glucosidase.
  
  
  0.454
lacZ_6
Beta-galactosidase.
  
  
 
0.439
lacZ_11
Beta-galactosidase.
  
  
 
0.438
abfA
Alpha-N-arabinofuranosidase.
  
  
  0.433
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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