STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btuB_2Outer membrane cobalamin translocator. (693 aa)    
Predicted Functional Partners:
cirA_4
Colicin I receptor precursor.
 
    
0.795
CUP29191.1
Iron-sulfur cluster repair di-iron protein.
 
     0.614
CUP29227.1
Fructoselysine 3-epimerase.
 
     0.609
nreC_3
Nitrogen regulation protein C.
   
   0.593
pkn1_2
Serine/threonine-protein kinase pkn1.
 
     0.553
CUP29264.1
Glycosyl hydrolase family 109 protein 1 precursor.
       0.542
CUO40159.1
Gliding motility-associated lipoprotein GldK.
  
     0.423
CUO55683.1
Uncharacterised protein.
  
     0.423
CUP18402.1
Enterobactin receptor protein.
  
    0.417
CUP36500.1
Putative iron-regulated outer membrane virulence protein.
  
     0.402
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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