STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP31791.1EcoKI restriction-modification system protein HsdS. (411 aa)    
Predicted Functional Partners:
CUP31517.1
Probable type I restriction enzyme BthVORF4518P M protein.
 
 
 0.971
CUP31564.1
Type I restriction-modification system methyltransferase subunit.
 
 
 0.971
hsdR
Type-1 restriction enzyme R protein.
 
  
 0.925
CUP58715.1
Type I restriction-modification system methyltransferase subunit.
 
 
 0.890
xerD_8
Tyrosine recombinase XerD.
     0.880
CUO62468.1
Uncharacterised protein.
  
 
 0.753
atpF
F-type ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.690
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.686
CUO47981.1
Predicted ATPase.
  
    0.600
CUP31741.1
Uncharacterised protein.
     0.594
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.