STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP31938.1Transposase DDE domain. (264 aa)    
Predicted Functional Partners:
CUP31979.1
Uncharacterised protein.
      0.972
CUO44635.1
Uncharacterised protein.
  
     0.753
CUO44653.1
Nucleotidyl transferase of uncharacterised function (DUF1814).
  
     0.742
CUO44362.1
Transcriptional activator FtrA.
  
     0.735
CUP31741.1
Uncharacterised protein.
  
     0.735
CUP58000.1
Uncharacterised protein.
  
     0.728
CUP55528.1
Uncharacterised protein.
  
     0.718
CUP82698.1
Molybdenum cofactor biosynthesis protein A.
  
     0.615
CUP55553.1
Predicted ATPase.
  
     0.612
CUP32357.1
Retron-type reverse transcriptase.
  
     0.606
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.