STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdCUncharacterized HTH-type transcriptional regulator ypdC. (282 aa)    
Predicted Functional Partners:
tetD
DNA-binding transcriptional regulator AraC.
  
     0.745
araC_1
Arabinose operon regulatory protein.
  
     0.744
CUO50157.1
DNA-binding transcriptional regulator AraC.
  
     0.744
araC_2
Arabinose operon regulatory protein.
  
     0.742
soxS
Regulatory protein soxS.
  
     0.733
rhaR
L-rhamnose operon transcriptional activator rhaR.
  
   0.727
CUO67841.1
DNA-binding transcriptional regulator AraC.
  
     0.720
gltB
Ferredoxin-dependent glutamate synthase 1.
    
  0.713
btr_1
Bacillibactin transport regulator.
  
     0.670
btr_7
Bacillibactin transport regulator.
  
     0.670
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.