STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP69142.1Fec operon regulator FecR. (282 aa)    
Predicted Functional Partners:
CUP69116.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.942
CUP69064.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.835
CUP69176.1
TonB-linked outer membrane protein%2C SusC/RagA family.
 
    0.830
CUO87546.1
Fec operon regulator FecR.
  
     0.775
CUP21867.1
FecR protein.
  
     0.775
CUO82754.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.767
CUO88727.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.756
CUO88424.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.737
CUO80858.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.725
CUP69094.1
TonB-linked outer membrane protein%2C SusC/RagA family.
 
    0.697
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.