STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP75945.1Translocation protein TolB. (307 aa)    
Predicted Functional Partners:
afr_2
1%2C5-anhydro-D-fructose reductase.
 
      0.862
CUO49579.1
Trehalose utilisation.
  
  0.792
CUO55636.1
Predicted thiol oxidoreductase.
   
 
 0.774
CUO38607.1
Xylose isomerase-like TIM barrel.
 
  0.682
CUP71757.1
Hydroxypyruvate isomerase.
 
  0.679
CUP60145.1
NIPSNAP.
  
   
 0.591
CUP27637.1
Putative L-xylulose 5-phosphate 3-epimerase.
 
 
  0.573
galK
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.511
ompA
Outer membrane protein II*.
  
  0.492
aldA
Lactaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.481
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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