STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP76485.1L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (476 aa)    
Predicted Functional Partners:
CUP76458.1
Bacterial alpha-L-rhamnosidase.
 
     0.919
CUP76426.1
Uncharacterised protein.
 
     0.861
rhaD
Rhamnulose-1-phosphate aldolase.
  
 
 0.790
CUO84097.1
Glycosyl hydrolases family 2%2C sugar binding domain.
 
     0.761
CUP51501.1
Uncharacterised protein.
 
     0.759
adaA_2
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
  
  0.740
araC_4
Arabinose operon regulatory protein.
  
  
  0.735
rhaS_1
L-rhamnose operon regulatory protein rhaS.
  
  
  0.731
CUP43969.1
Bacterial alpha-L-rhamnosidase.
  
     0.639
CUP44003.1
Bacterial alpha-L-rhamnosidase.
  
     0.635
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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