STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP77088.1Outer membrane protein (porin). (675 aa)    
Predicted Functional Partners:
CUP77138.1
Uncharacterised protein.
 
     0.926
CUO84223.1
Uncharacterised protein.
  
     0.765
CUP77170.1
Uncharacterised protein.
       0.699
CUP45570.1
comEA protein.
  
     0.677
ywaD
Arginyl aminopeptidase.
 
     0.669
CUP82269.1
Outer membrane receptor FepA.
  
     0.648
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
   
 0.646
CUP16318.1
Uncharacterised protein.
  
     0.627
CUP39002.1
Tetratricopeptide repeat.
  
     0.614
CUP33724.1
Outer membrane protein.
 
     0.602
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.