STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJ_3Putative colanic biosynthesis UDP-glucose lipid carrier transferase. (465 aa)    
Predicted Functional Partners:
ptk_1
Tyrosine-protein kinase ptk.
 
 
 0.996
ptk_2
Tyrosine-protein kinase ptk.
 
 
 0.996
rfbM_3
Mannose-1-phosphate guanylyltransferase rfbM.
  
 
 0.996
ptk_3
Tyrosine-protein kinase ptk.
 
 
 0.996
ptk_4
Tyrosine-protein kinase ptk.
  
 
 0.994
gmd_2
GDP-mannose 4%2C6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.946
CUP88116.1
Polysaccharide export protein Wza.
 
 
 0.944
CUO57264.1
Polysaccharide export protein Wza.
 
 
 0.939
CUP56442.1
Polysaccharide export protein Wza.
 
 
 0.938
CUP78850.1
Polysaccharide export protein Wza.
 
 
 0.935
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.