STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP82269.1Outer membrane receptor FepA. (902 aa)    
Predicted Functional Partners:
CUP82302.1
Fec operon regulator FecR.
    0.821
CUP03340.1
TonB family C-terminal domain; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.755
CUP82234.1
Uncharacterised protein.
       0.737
CUP77088.1
Outer membrane protein (porin).
  
     0.648
CUO98127.1
SusD family.
  
     0.618
CUO57186.1
Bacterial putative lipoprotein (DUF940).
  
     0.539
CUO58452.1
M56 family peptidase; Antirepressor regulating drug resistance%2C predicted signal transduction N-terminal membrane component.
  
   0.476
CUO36790.1
Membrane protein involved in colicin uptake.
  
   0.469
CUO99865.1
Rhomboid family.
  
     0.463
CUP17549.1
DNA-binding transcriptional repressor AcrR.
  
     0.462
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.