STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUP86096.1Bacteroides conjugative transposon TraM protein. (296 aa)    
Predicted Functional Partners:
CUP86126.1
Bacteroides conjugative transposon TraN protein.
 
     0.947
CUP85978.1
Conjugal transfer ATP-binding protein TraC.
 
     0.942
CUP85884.1
Type IV secretory pathway%2C VirD4 components.
 
     0.859
CUP85850.1
Uncharacterised protein.
 
     0.784
CUO66528.1
Bacteroides conjugative transposon TraK protein.
 
     0.780
CUO45026.1
Type IV secretory pathway%2C TrbF components.
 
     0.779
traK
Bacteroides conjugative transposon TraK protein.
 
     0.778
CUP86062.1
Uncharacterised protein.
       0.778
CUO44853.1
Type IV secretory pathway%2C VirB4 components.
 
     0.776
CUP58117.1
Type IV secretory pathway%2C VirB4 components.
 
     0.776
Your Current Organism:
Parabacteroides merdae
NCBI taxonomy Id: 46503
Other names: ATCC 43184, Bacteroides merdae, CCUG 38734, CIP 104202, JCM 9497, NCTC 13052, P. merdae, VPI T4-1
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